BridgeRCompare: Comparison of two BRIC-seq datasets
In Naoto-Imamachi/BridgeR: Comprehensive BRIC-seq data analysis tool

Description Usage Arguments Details Value Note Author(s) References Examples

Comparison of two BRIC-seq datasets

BridgeRCompare(InputFile="BridgeR_5C_HalfLife_calculation_R2_selection.txt",
                           InforColumn = 4,
                           group, 
                           hour, 
                           ComparisonFile,
                           CutoffDataPointNumber = 4,
                           ModelMode="R2_selection",
                           Calibration=F)

`InputFile`	Your RPKM value data
`InforColumn`	information column length
`group`	Group
`hour`	Time course
`ComparisonFile`	Group which you want to compare
`CutoffDataPointNumber`	Integer
`ModelMode`	Mode
`Calibration`	Bool (True or False)

Comparison of two BRIC-seq datasets

Fig files

2015-11-05

Naoto Imamachi

https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (InputFile="BridgeR_5C_HalfLife_calculation_R2_selection.txt",
                           InforColumn = 4,
                           group, 
                           hour, 
                           ComparisonFile,
                           CutoffDataPointNumber = 4,
                           ModelMode="R2_selection",
                           Calibration=F)
{
}