BridgeRHalfLifecalc: Calculation of RNA half-life for each gene
In Naoto-Imamachi/BridgeR: Comprehensive BRIC-seq data analysis tool

Description Usage Arguments Details Value Note Author(s) References Examples

Calculation of RNA half-life for each gene.

BridgeRHalfLifeCalc(InputFiles = "BridgeR_4_Normalized_expression_dataset.txt", 
                                InforColumn = 4, 
                                group, 
                                hour,
                                CutoffDataPointNumber = 4,
                                CutoffDataPoint1 = c(1,2),
                                CutoffDataPoint2 = c(8,12),
                                ThresholdHalfLife = c(8,12),
                                CutoffRelExp=0.001,
                                ModelMode="R2_selection")

`InputFiles`	Vector
`InforColumn`	Integer
`group`	Vector(string)
`hour`	Vector(number)
`CutoffDataPointNumber`	Integer
`CutoffDataPoint1`	Vector(Integer or float)
`CutoffDataPoint2`	Vector(Integer or float)
`ThresholdHalfLife`	Vector(Integer or float)
`CutoffRelExp`	Float
`ModelMode`	Bool(True or False)

Calculation of RNA half-life for each gene.

text files and fig files

2015-11-25

Naoto Imamachi

https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (InputFiles = "BridgeR_4_Normalized_expression_dataset.txt", 
                                InforColumn = 4, 
                                group, 
                                hour,
                                CutoffDataPointNumber = 4,
                                CutoffDataPoint1 = c(1,2),
                                CutoffDataPoint2 = c(8,12),
                                ThresholdHalfLife = c(8,12),
                                CutoffRelExp=0.001,
                                ModelMode="R2_selection") 
{
}