BridgeRHalfLifeCalcR2Select: Calculate RNA half-life from BRIC-seq data
In Naoto-Imamachi/BridgeR: Comprehensive BRIC-seq data analysis tool

Description Usage Arguments Details Value Note Author(s) References Examples

View source: R/Z5C_estimate_fitting_decay_curve_R2_selection.r

Calculate RNA half-life from BRIC-seq data

BridgeRHalfLifeCalcR2Select(InputFile = "BridgeR_4_Normalized_expression_dataset.txt",
                            group, 
                            hour, 
                            InforColumn = 4, 
                            CutoffDataPointNumber = 4,
                            CutoffDataPoint1 = c(1,2),
                            CutoffDataPoint2 = c(8,12),
                            ThresholdHalfLife = c(8,12),
                            OutputFile = "BridgeR_5C_HalfLife_calculation_R2_selection.txt")

`InputFile`	File path/name
`group`	Vector(string)
`hour`	Vector(number)
`InforColumn`	Integer
`CutoffDataPointNumber`	Integer
`CutoffDataPoint1`	Vector(Integer)
`CutoffDataPoint2`	Vector(Integer)
`ThresholdHalfLife`	Vector(Integer)
`OutputFile`	File path/name

Calculate RNA half-life from BRIC-seq data

text file

2015-11-24

Naoto Imamachi

https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (InputFile = "BridgeR_4_Normalized_expression_dataset.txt",
                            group, 
                            hour, 
                            InforColumn = 4, 
                            CutoffDataPointNumber = 4,
                            CutoffDataPoint1 = c(1,2),
                            CutoffDataPoint2 = c(8,12),
                            ThresholdHalfLife = c(8,12),
                            OutputFile = "BridgeR_5C_HalfLife_calculation_R2_selection.txt")
{
}