Description Usage Arguments Details Value Note Author(s) References Examples
View source: R/Z5C_estimate_fitting_decay_curve_R2_selection.r
Calculate RNA half-life from BRIC-seq data
1 2 3 4 5 6 7 8 9 | BridgeRHalfLifeCalcR2Select(InputFile = "BridgeR_4_Normalized_expression_dataset.txt",
group,
hour,
InforColumn = 4,
CutoffDataPointNumber = 4,
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12),
ThresholdHalfLife = c(8,12),
OutputFile = "BridgeR_5C_HalfLife_calculation_R2_selection.txt")
|
InputFile |
File path/name |
group |
Vector(string) |
hour |
Vector(number) |
InforColumn |
Integer |
CutoffDataPointNumber |
Integer |
CutoffDataPoint1 |
Vector(Integer) |
CutoffDataPoint2 |
Vector(Integer) |
ThresholdHalfLife |
Vector(Integer) |
OutputFile |
File path/name |
Calculate RNA half-life from BRIC-seq data
text file
2015-11-24
Naoto Imamachi
https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
## The function is currently defined as
function (InputFile = "BridgeR_4_Normalized_expression_dataset.txt",
group,
hour,
InforColumn = 4,
CutoffDataPointNumber = 4,
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12),
ThresholdHalfLife = c(8,12),
OutputFile = "BridgeR_5C_HalfLife_calculation_R2_selection.txt")
{
}
|
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