BridgeRHalfSD: Calculate RNA half-life SD
In Naoto-Imamachi/BridgeR: Comprehensive BRIC-seq data analysis tool

Description Usage Arguments Details Value Note Author(s) References Examples

View source: R/HalfLife_SD_Geometric_mean.R

Calculate RNA half-life SD

BridgeRHalfSD(HalflifeFiles = c("BridgeR_6_HalfLife_Pvalue_estimation_PUM1_study.txt",
                                "BridgeR_6_HalfLife_Pvalue_estimation_PUM2_study.txt",
                                "BridgeR_6_HalfLife_Pvalue_estimation_PUM1_2_study.txt"),
              RPKMFiles = c("siStealth_PUM1_study_compatible_genes_RefSeq_result_mRNA.fpkm_table",
                            "siCTRL_PUM2_study_compatible_genes_RefSeq_result_mRNA.fpkm_table",
                            "siCTRL_PUM1_2_study_RefSeq_compatible_genes_RefSeq_result_mRNA.fpkm_table"),
              hour = c(0,1,2,4,8,12),
              InforColumn=4,
              CompFiles = c(1,1,1),
              CompNames = c("siStealth_PUM1_study","siCTRL_PUM2_study","siCTRL_PUM1_2_study"),
              OutputFile = "HalfLife_RPKM_mean_SD.txt")

`HalflifeFiles`	File path/name
`RPKMFiles`	File path/name
`hour`	Vector(number)
`InforColumn`	Integer
`CompFiles`	Vector(integer)
`CompNames`	File path/name
`OutputFile`	File path/name

Calculate RNA half-life SD

text file

2015-12-01

Naoto Imamachi

https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (HalflifeFiles = c("BridgeR_6_HalfLife_Pvalue_estimation_PUM1_study.txt",
                                "BridgeR_6_HalfLife_Pvalue_estimation_PUM2_study.txt",
                                "BridgeR_6_HalfLife_Pvalue_estimation_PUM1_2_study.txt"),
              RPKMFiles = c("siStealth_PUM1_study_compatible_genes_RefSeq_result_mRNA.fpkm_table",
                            "siCTRL_PUM2_study_compatible_genes_RefSeq_result_mRNA.fpkm_table",
                            "siCTRL_PUM1_2_study_RefSeq_compatible_genes_RefSeq_result_mRNA.fpkm_table"),
              hour = c(0,1,2,4,8,12),
              InforColumn=4,
              CompFiles = c(1,1,1),
              CompNames = c("siStealth_PUM1_study","siCTRL_PUM2_study","siCTRL_PUM1_2_study"),
              OutputFile = "HalfLife_RPKM_mean_SD.txt")
{
}