Description Usage Arguments Details Value Note Author(s) References Examples
View source: R/HalfLife_SD_Geometric_mean.R
Calculate RNA half-life SD
1 2 3 4 5 6 7 8 9 10 11 | BridgeRHalfSD(HalflifeFiles = c("BridgeR_6_HalfLife_Pvalue_estimation_PUM1_study.txt",
"BridgeR_6_HalfLife_Pvalue_estimation_PUM2_study.txt",
"BridgeR_6_HalfLife_Pvalue_estimation_PUM1_2_study.txt"),
RPKMFiles = c("siStealth_PUM1_study_compatible_genes_RefSeq_result_mRNA.fpkm_table",
"siCTRL_PUM2_study_compatible_genes_RefSeq_result_mRNA.fpkm_table",
"siCTRL_PUM1_2_study_RefSeq_compatible_genes_RefSeq_result_mRNA.fpkm_table"),
hour = c(0,1,2,4,8,12),
InforColumn=4,
CompFiles = c(1,1,1),
CompNames = c("siStealth_PUM1_study","siCTRL_PUM2_study","siCTRL_PUM1_2_study"),
OutputFile = "HalfLife_RPKM_mean_SD.txt")
|
HalflifeFiles |
File path/name |
RPKMFiles |
File path/name |
hour |
Vector(number) |
InforColumn |
Integer |
CompFiles |
Vector(integer) |
CompNames |
File path/name |
OutputFile |
File path/name |
Calculate RNA half-life SD
text file
2015-12-01
Naoto Imamachi
https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
## The function is currently defined as
function (HalflifeFiles = c("BridgeR_6_HalfLife_Pvalue_estimation_PUM1_study.txt",
"BridgeR_6_HalfLife_Pvalue_estimation_PUM2_study.txt",
"BridgeR_6_HalfLife_Pvalue_estimation_PUM1_2_study.txt"),
RPKMFiles = c("siStealth_PUM1_study_compatible_genes_RefSeq_result_mRNA.fpkm_table",
"siCTRL_PUM2_study_compatible_genes_RefSeq_result_mRNA.fpkm_table",
"siCTRL_PUM1_2_study_RefSeq_compatible_genes_RefSeq_result_mRNA.fpkm_table"),
hour = c(0,1,2,4,8,12),
InforColumn=4,
CompFiles = c(1,1,1),
CompNames = c("siStealth_PUM1_study","siCTRL_PUM2_study","siCTRL_PUM1_2_study"),
OutputFile = "HalfLife_RPKM_mean_SD.txt")
{
}
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