BridgeRHalfLifeComparison: Draw scattered plot to compare RNA half-life between two...
In Naoto-Imamachi/BridgeR: Comprehensive BRIC-seq data analysis tool

Description Usage Arguments Details Value Note Author(s) References Examples

Draw scattered plot to compare RNA half-life between two conditions.

BridgeRHalfLifeComparison(filename = "BridgeR_5C_HalfLife_calculation_R2_selection.txt", 
                          group, 
                          hour, 
                          ComparisonFile, 
                          InforColumn = 4, 
                          LogScale = F, 
                          Calibration=F, 
                          OutputFig = "BridgeR_7_HalfLife_Comparison_ScatteredPlot", 
                          ModelMode = "R2_selection")

`filename`	File path/name
`group`	Vector(string)
`hour`	Vector(number)
`ComparisonFile`	Vector(string)
`InforColumn`	Integer
`LogScale`	Bool(True or False)
`Calibration`	Bool(True or False)
`OutputFig`	File path/name
`ModelMode`	Mode

Draw scattered plot to compare RNA half-life between two conditions.

fig file

2015-11-05

Naoto Imamachi

https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.
#inputfile <- "BridgeR_5_HalfLife_calculation.txt"
#outputfig <- "BridgeR_5_HalfLife_Comparison_ScatteredPlot"
#group <- c("Control","knockdown1","knockdown2")
#hour <- c(0,1,2,4,8,12)
#compfile <- c("Control","Knockdown1")

#BridgeRHalfLifeComparison(filename=inputfile, group=group, hour=hour, ComparisonFile=compfile, OutputFig=outputfig)

## The function is currently defined as
function (filename = "BridgeR_5C_HalfLife_calculation_R2_selection.txt", 
                          group, 
                          hour, 
                          ComparisonFile, 
                          InforColumn = 4, 
                          LogScale = F, 
                          Calibration=F, 
                          OutputFig = "BridgeR_7_HalfLife_Comparison_ScatteredPlot", 
                          ModelMode = "R2_selection") 
{
}