BridgeRHalfSDGrubbsTest: Calculate RNA half-life SD
In Naoto-Imamachi/BridgeR: Comprehensive BRIC-seq data analysis tool

Description Usage Arguments Details Value Note Author(s) References Examples

Calculate RNA half-life SD

BridgeRHalfSDGrubbsTest(HalfLifeFile = "HalfLife_RPKM_mean_SD.txt",
                                    HalfLifeCompFile = "BridgeR_6_HalfLife_Pvalue_estimation_PUM2_study.txt",
                                    hour = c(0,1,2,4,8,12),
                                    InforColumn = 4,
                                    CompFile = 2,
                                    CompName = "siPUM2_PUM2_study",
                                    NormNames = c("siStealth_PUM1_study","siCTRL_PUM2_study","siCTRL_PUM1_2_study"),
                                    OutputFile = "HalfLife_Grubbs_test.txt")

`HalfLifeFile`	File path/name
`HalfLifeCompFile`	File path/name
`hour`	Vector(number)
`InforColumn`	Integer
`CompFile`	integer
`CompName`	string
`NormNames`	Vector(string)
`OutputFile`	File path/name

Calculate RNA half-life SD

text file

2015-12-01

Naoto Imamachi

https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (HalfLifeFile = "HalfLife_RPKM_mean_SD.txt",
                                    HalfLifeCompFile = "BridgeR_6_HalfLife_Pvalue_estimation_PUM2_study.txt",
                                    hour = c(0,1,2,4,8,12),
                                    InforColumn = 4,
                                    CompFile = 2,
                                    CompName = "siPUM2_PUM2_study",
                                    NormNames = c("siStealth_PUM1_study","siCTRL_PUM2_study","siCTRL_PUM1_2_study"),
                                    OutputFile = "HalfLife_Grubbs_test.txt")
{
}