Files in PFPrzytycki/CellWalkR
An R Package for Integrating and Visualizing Single-Cell and Bulk Data to Resolve Regulatory Elements
CellWalkR.Rproj
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/CellWalkerFunctions.R
R/DataParsingFunctions.R
R/DownstreamAnalysisFunctions.R
R/InteractiveFunctions.R
R/Test.R
R/data.R
README.md
data/SampleCellWalkRData.rda
examples/CellWalkR_TensorFlow_Vignette.md
examples/CellWalkR_Vignette.md
examples/CellWalkR_Vignette_files/figure-gfm/detect-doublets-1.png
examples/CellWalkR_Vignette_files/figure-gfm/downstream-labelLabels-1.png
examples/CellWalkR_Vignette_files/figure-gfm/downstream-plotCellsInf-1.png
examples/CellWalkR_Vignette_files/figure-gfm/downstream-plotCellsLabels-1.png
examples/CellWalkR_Vignette_files/figure-gfm/downstream-plotCellsRare-1.png
examples/CellWalkR_Vignette_files/figure-gfm/downstream-plotLabels-1.png
examples/CellWalkR_Vignette_files/figure-gfm/downstream-plotMST-1.png
examples/CellWalkR_Vignette_files/figure-gfm/downstream-plotSingleLabel-1.png
examples/CellWalkR_Vignette_files/figure-gfm/downstream-uncertainty-1.png
examples/CellWalkR_Vignette_files/figure-gfm/moreLabels-plots-1.png
examples/CellWalkR_Vignette_files/figure-gfm/moreLabels-plots-2.png
examples/CellWalkR_Vignette_files/figure-markdown_github/SnapATAC.png
examples/CellWalkR_Vignette_files/figure-markdown_github/cellwalker_icon.png
examples/CellWalkR_Vignette_files/figure-markdown_github/downstream-labelLabels-1.png
examples/CellWalkR_Vignette_files/figure-markdown_github/downstream-plotCellsInf-1.png
examples/CellWalkR_Vignette_files/figure-markdown_github/downstream-plotCellsLabels-1.png
examples/CellWalkR_Vignette_files/figure-markdown_github/downstream-plotCellsRare-1.png
examples/CellWalkR_Vignette_files/figure-markdown_github/downstream-plotLabels-1.png
examples/CellWalkR_Vignette_files/figure-markdown_github/downstream-plotMST-1.png
examples/CellWalkR_Vignette_files/figure-markdown_github/downstream-plotSingleLabel-1.png
examples/CellWalkR_Vignette_files/figure-markdown_github/downstream-uncertainty-1.png
examples/CellWalkR_Vignette_files/figure-markdown_github/moreLabels-plots-1.png
examples/CellWalkR_Vignette_files/figure-markdown_github/moreLabels-plots-2.png
examples/Interacting_Vignette.md
examples/Other_Data_Vignette.md
examples/SnapPlot.md
inst/extdata/Hg38_knownGene.rds
inst/extdata/Mm10_ensGene.rds
inst/extdata/Mm10_knownGene.rds
inst/extdata/SampleFilter.bed
inst/extdata/SampleMarkers1.txt
inst/extdata/SampleMarkers2.txt
inst/extdata/sampleEnhancers.bed
man/PCAdist.Rd
man/SampleCellWalkRData.Rd
man/clusterLabels.Rd
man/combineGraph.Rd
man/combineMultiLabelGraph.Rd
man/computeCellHomogeneity.Rd
man/computeCellSim.Rd
man/computeLabelEdges.Rd
man/computeMST.Rd
man/downloadSampleData.Rd
man/findMarkers.Rd
man/findUncertainLabels.Rd
man/getRegions.Rd
man/labelBulk.Rd
man/launchViz.Rd
man/loadSampleData.Rd
man/mapArchRToGenes.Rd
man/mapCiceroToGenes.Rd
man/mapPeaksToGenes.Rd
man/mapSnapATACToGenes.Rd
man/normalizeInfluence.Rd
man/plotCells.Rd
man/plotMultiLevelLabels.Rd
man/randomWalk.Rd
man/scoreDoublets.Rd
man/selectLabels.Rd
man/selectMultiLevelLabels.Rd
man/sparseJaccard.Rd
man/storeBulk.Rd
man/storeMat.Rd
man/tensorJaccard.Rd
man/tuneEdgeWeights.Rd
man/tuneFilterWeights.Rd
man/walkCells.Rd
vignettes/CellWalkR.Rmd
vignettes/CellWalkR_files/MathJax.js
