bt.annotate: Annotates the depth & breadth of coverage of features from...

In PhanstielLab/bedtoolsr: Bedtools Wrapper

Annotates the depth & breadth of coverage of features from mult. files on the intervals in -i.

Description

Annotates the depth & breadth of coverage of features from mult. files on the intervals in -i.

Usage

bt.annotate(
  i,
  files,
  names = NULL,
  counts = NULL,
  both = NULL,
  s = NULL,
  S = NULL,
  output = NULL
)

Arguments

i	<bed/gff/vcf>
files	FILE1 FILE2..FILEn
names	A list of names (one / file) to describe each file in -i. These names will be printed as a header line.
counts	Report the count of features in each file that overlap -i. - Default is to report the fraction of -i covered by each file.
both	Report the counts followed by the percent coverage. - Default is to report the fraction of -i covered by each file.
s	Require same strandedness. That is, only counts overlaps on the _same_ strand. - By default, overlaps are counted without respect to strand.
S	Require different strandedness. That is, only count overlaps on the _opposite_ strand. - By default, overlaps are counted without respect to strand.
output	Output filepath instead of returning output in R.

PhanstielLab/bedtoolsr documentation built on Nov. 13, 2022, 10:38 p.m.