bt.bedtobam: Converts feature records to BAM format.
In PhanstielLab/bedtoolsr: Bedtools Wrapper
bt.bedtobam R Documentation
Converts feature records to BAM format.
Description
Converts feature records to BAM format.
Usage
bt.bedtobam(i, g, mapq = NULL, bed12 = NULL, ubam = NULL, output = NULL)
Arguments
i
<bed/gff/vcf>
g
<genome>
mapq
Set the mappinq quality for the BAM records.
(INT) Default: 255
bed12
The BED file is in BED12 format. The BAM CIGAR
string will reflect BED "blocks".
ubam
Write uncompressed BAM output. Default writes compressed BAM.
output
Output filepath instead of returning output in R.
PhanstielLab/bedtoolsr documentation built on Aug. 29, 2024, 5:37 p.m.
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| bt.bedtobam | R Documentation |
Converts feature records to BAM format.
Description
Converts feature records to BAM format.
Usage
bt.bedtobam(i, g, mapq = NULL, bed12 = NULL, ubam = NULL, output = NULL)
Arguments
i |
<bed/gff/vcf> |
g |
<genome> |
mapq |
Set the mappinq quality for the BAM records. (INT) Default: 255 |
bed12 |
The BED file is in BED12 format. The BAM CIGAR string will reflect BED "blocks". |
ubam |
Write uncompressed BAM output. Default writes compressed BAM. |
output |
Output filepath instead of returning output in R. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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