bt.bedtobam: Converts feature records to BAM format.

View source: R/bt.bedtobam.R

bt.bedtobamR Documentation

Converts feature records to BAM format.

Description

Converts feature records to BAM format.

Usage

bt.bedtobam(i, g, mapq = NULL, bed12 = NULL, ubam = NULL, output = NULL)

Arguments

i

<bed/gff/vcf>

g

<genome>

mapq

Set the mappinq quality for the BAM records. (INT) Default: 255

bed12

The BED file is in BED12 format. The BAM CIGAR string will reflect BED "blocks".

ubam

Write uncompressed BAM output. Default writes compressed BAM.

output

Output filepath instead of returning output in R.


PhanstielLab/bedtoolsr documentation built on Aug. 29, 2024, 5:37 p.m.