bt.multiinter: Identifies common intervals among multiple BED/GFF/VCF files.

In PhanstielLab/bedtoolsr: Bedtools Wrapper

Identifies common intervals among multiple BED/GFF/VCF files.

Description

Identifies common intervals among multiple BED/GFF/VCF files.

Usage

bt.multiinter(
  i,
  cluster = NULL,
  header = NULL,
  names = NULL,
  g = NULL,
  empty = NULL,
  filler = NULL,
  examples = NULL,
  output = NULL
)

Arguments

i	FILE1 FILE2 .. FILEn Requires that each interval file is sorted by chrom/start.
cluster	Invoke Ryan Layers's clustering algorithm.
header	Print a header line. (chrom/start/end + names of each file).
names	A list of names (one/file) to describe each file in -i. These names will be printed in the header line.
g	Use genome file to calculate empty regions. - STRING.
empty	Report empty regions (i.e., start/end intervals w/o values in all files). - Requires the '-g FILE' parameter.
filler	Use TEXT when representing intervals having no value. - Default is '0', but you can use 'N/A' or any text.
examples	Show detailed usage examples.
output	Output filepath instead of returning output in R.

PhanstielLab/bedtoolsr documentation built on Aug. 29, 2024, 5:37 p.m.