bt.slop: Add requested base pairs of "slop" to each feature.

In PhanstielLab/bedtoolsr: Bedtools Wrapper

Add requested base pairs of "slop" to each feature.

Description

Add requested base pairs of "slop" to each feature.

Usage

bt.slop(
  i,
  g,
  b = NULL,
  l = NULL,
  r = NULL,
  s = NULL,
  pct = NULL,
  header = NULL,
  output = NULL
)

Arguments

i	<bed/gff/vcf>
g	<genome>
b	Increase the BED/GFF/VCF entry -b base pairs in each direction. - (Integer) or (Float, e.g. 0.1) if used with -pct.
l	The number of base pairs to subtract from the start coordinate. - (Integer) or (Float, e.g. 0.1) if used with -pct.
r	The number of base pairs to add to the end coordinate. - (Integer) or (Float, e.g. 0.1) if used with -pct.
s	Define -l and -r based on strand. E.g. if used, -l 500 for a negative-stranded feature, it will add 500 bp downstream. Default = false.
pct	Define -l and -r as a fraction of the feature's length. E.g. if used on a 1000bp feature, -l 0.50, will add 500 bp "upstream". Default = false.
header	Print the header from the input file prior to results.
output	Output filepath instead of returning output in R.

PhanstielLab/bedtoolsr documentation built on Aug. 29, 2024, 5:37 p.m.