bt.sort | R Documentation |
Sorts a feature file in various and useful ways.
bt.sort( i, sizeA = NULL, sizeD = NULL, chrThenSizeA = NULL, chrThenSizeD = NULL, chrThenScoreA = NULL, chrThenScoreD = NULL, g = NULL, faidx = NULL, header = NULL, output = NULL )
i |
<bed/gff/vcf> |
sizeA |
Sort by feature size in ascending order. |
sizeD |
Sort by feature size in descending order. |
chrThenSizeA |
Sort by chrom (asc), then feature size (asc). |
chrThenSizeD |
Sort by chrom (asc), then feature size (desc). |
chrThenScoreA |
Sort by chrom (asc), then score (asc). |
chrThenScoreD |
Sort by chrom (asc), then score (desc). |
g |
Sort according to the chromosomes declared in "genome.txt" |
faidx |
Sort according to the chromosomes declared in "names.txt" |
header |
Print the header from the A file prior to results. |
output |
Output filepath instead of returning output in R. |
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