bt.maskfasta: Mask a fasta file based on feature coordinates.

In PhanstielLab/bedtoolsr: Bedtools Wrapper

Mask a fasta file based on feature coordinates.

Description

Mask a fasta file based on feature coordinates.

Usage

bt.maskfasta(
  fi,
  fo,
  bed,
  soft = NULL,
  mc = NULL,
  fullHeader = NULL,
  output = NULL
)

Arguments

fi	<fasta>
fo	<fasta>
bed	<bed/gff/vcf>
soft	Enforce "soft" masking. Mask with lower-case bases, instead of masking with Ns.
mc	Replace masking character. Use another character, instead of masking with Ns.
fullHeader	Use full fasta header. By default, only the word before the first space or tab is used.
output	Output filepath instead of returning output in R.

PhanstielLab/bedtoolsr documentation built on Aug. 29, 2024, 5:37 p.m.