bt.sample: Take sample of input file(s) using reservoir sampling...

In PhanstielLab/bedtoolsr: Bedtools Wrapper

Take sample of input file(s) using reservoir sampling algorithm.

Description

Take sample of input file(s) using reservoir sampling algorithm.

Usage

bt.sample(
  i,
  n = NULL,
  seed = NULL,
  ubam = NULL,
  s = NULL,
  header = NULL,
  bed = NULL,
  nobuf = NULL,
  iobuf = NULL,
  output = NULL
)

Arguments

i	<bed/gff/vcf/bam>
n	The number of records to generate. - Default = 1,000,000. - (INTEGER)
seed	Supply an integer seed for the shuffling. - By default, the seed is chosen automatically. - (INTEGER)
ubam	Write uncompressed BAM output. Default writes compressed BAM.
s	Require same strandedness. That is, only give records that have the same strand. Use '-s forward' or '-s reverse' for forward or reverse strand records, respectively. - By default, records are reported without respect to strand.
header	Print the header from the A file prior to results.
bed	If using BAM input, write output as BED.
nobuf	Disable buffered output. Using this option will cause each line of output to be printed as it is generated, rather than saved in a buffer. This will make printing large output files noticeably slower, but can be useful in conjunction with other software tools and scripts that need to process one line of bedtools output at a time.
iobuf	Specify amount of memory to use for input buffer. Takes an integer argument. Optional suffixes K/M/G supported. Note: currently has no effect with compressed files.
output	Output filepath instead of returning output in R.

PhanstielLab/bedtoolsr documentation built on Nov. 13, 2022, 10:38 p.m.