PietaSchofield/plibb
Pieta Schofield's repository of former useful R functions

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bamToBed: create bed file from a bam file

bamToBed: create bed file from a bam file
In PietaSchofield/plibb: Pieta Schofield's repository of former useful R functions

Description Usage Arguments

View source: R/bamToBed.R

Description

create bed file from a bam file

Usage

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bamToBed(inFile, outDir, projName, paired = "",
  outRoot = file.path("/scratch/pschofield/Projects", projName),
  bedtoolsMod = "apps/bedtools/2.25.0/gcc-4.4.7")

Arguments

inFile

input bam file

outDir

output directory

projName

name of the project


PietaSchofield/plibb documentation built on May 6, 2019, 6:45 p.m.

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