custHMMsegment: Custom CNV segmentation

Description Usage Arguments

View source: R/custHMMseqment.R

Description

uses HMMcopy HMMsegment function but applys a custom segmentation mu string

Usage

1
custHMMsegment(cn, pl, outFile = NULL)

Arguments

cn

corrected copy number RangedData object

outFile

if specified writes the segmentation out as a wig file

segmentationMu

comma separated string of values

long

if true performs adjustment to favour long segments


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.