evalCluster2: evalCluster

Description Usage Arguments

View source: R/evalSignatureSurv.R

Description

function from etv1 projects not totally sure when I wrote this I have no memory of it It seems to take the results from the glmnet modelling to perform a KM survival analysis on a set of expression values split by cluster don't really know what the gcl parameter is all abou yet

Usage

1
2
evalCluster2(expData, survData, hm = F, gcl = F, gcts = 10,
  cmeth = "ward.D2", titletxt = "")

Arguments

expData

is an expression matrix rows=genes cols=samples

survData

is a survival data frame with columns time and status

hm

generate heatmap boolean

gcl

if generating heatmap do or don't cluster the genes as well as the samples

gcts

the number of cuts to attempt of the cluster

cmeth

hierarchical clustering method (distance is correlation)


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.