genSGEHead: Batch job script creation

Description Usage Arguments

View source: R/genSGEHead.R

Description

Generate headers for running batch PBS jobs

Usage

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genSGEHead(jobName = "myrun", jobDescription = "My analysis",
  Nnodes = 1, Nproc = 16, Memory = NULL,
  email = "[email protected]", emailMode = "ae",
  logDir = "/scratch/log", pe = "smp.pe")

Arguments

jobName

name of job

jobDescription

description of job

Nnodes

number of nodes requested

Nproc

number of cores requested

Memory

size of memory requested

email

address to notify of job progress

Walltime

limit to run time

delayTil

time delay for start

environ

pass current environment variables

overwrite

boolean overwrite existing scripts

log.dir

directory output logs


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.