genCNVmapGC: generate wiggle tracks for HMMcopy

Description Usage Arguments

View source: R/genCNVmapGC.R

Description

generate wiggle tracks for HMMcopy

Usage

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genCNVmapGC(projName, remRoot = "/scratch/pschofield/Projects",
  outPath = "Analysis/wigs", noSub = F, ncores = 1, scpIt = T,
  mem = "16Gb", windowSize, chrNames = c(seq(1, 22), "X", "Y"),
  genomeFasta, mapFile, hmmCopyMod = "apps/hmmcopy/0.99.0/gcc-4.4.7")

Arguments

projName

the project

sampleID

the bam files

location

of bam files


PietaSchofield/plibb documentation built on Nov. 11, 2018, 5:15 a.m.