genCNVwigs: generate wiggle tracks for HMMcopy
In PietaSchofield/plibb: Pieta Schofield's repository of former useful R functions
Description
generate wiggle tracks for HMMcopy
Usage
1
2
3
4
5
genCNVwigs(sampleID, projName, bamDir, bamExt = "_dedup_realn_recal.bam",
outDir = file.path("/scratch/pschofield/Projects", projName,
"Analysis/wigs"), noSub = T, ncores = 1, scpIt = T, mem = "16Gb",
windowSize, chrNames = c(seq(1, 22), "X", "Y"),
hmmCopyMod = "apps/hmmcopy/0.99.0/gcc-4.4.7")
Arguments
sampleID
the bam files
projName
the project
location
of bam files
PietaSchofield/plibb documentation built on May 6, 2019, 6:45 p.m.
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Description
generate wiggle tracks for HMMcopy
Usage
1 2 3 4 5 | genCNVwigs(sampleID, projName, bamDir, bamExt = "_dedup_realn_recal.bam",
outDir = file.path("/scratch/pschofield/Projects", projName,
"Analysis/wigs"), noSub = T, ncores = 1, scpIt = T, mem = "16Gb",
windowSize, chrNames = c(seq(1, 22), "X", "Y"),
hmmCopyMod = "apps/hmmcopy/0.99.0/gcc-4.4.7")
|
Arguments
sampleID |
the bam files |
projName |
the project |
location |
of bam files |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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