Generate headers for running batch PBS jobs
1 2 3 4 5 6 | genPBSHead(jobName = "myrun", jobDescription = "My analysis",
Nnodes = 1, Nproc = 16, Memory = "32gb", Walltime = "1:00:00",
delayTil = NULL, environ = TRUE,
email = "pieta.schofield@manchester.ac.uk", overwrite = FALSE,
emailMode = "ae", log.dir = "/data/compbio/pschofield/logs",
dirSet = NULL, jobDep = NULL)
|
jobName |
name of job |
jobDescription |
description of job |
Nnodes |
number of nodes requested |
Nproc |
number of cores requested |
Memory |
size of memory requested |
Walltime |
limit to run time |
delayTil |
time delay for start |
environ |
pass current environment variables |
email |
address to notify of job progress |
overwrite |
boolean overwrite existing scripts |
log.dir |
directory output logs |
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