Description Usage Arguments Details
Builds a genome Index at 'Utils/Reference_Genome/STARIndex'
1 2 | buildGenomeIndexSTAR(path = NULL, gtf_file = "", fasta_file = NULL,
star_threads = 1, name = NULL)
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path |
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gtf_file |
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fasta_file |
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star_threads |
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name |
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You must specify the Utils path if it is not already defined, and have your genome and annotation file in a folder titled 'Reference_Genome'. This function will construct the genome index using STAR tools. The command line is the default shown in the documentation. A fasta_file must be provided. gtf_file is highly recommended, and if not provided, STAR will run without annotations.
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