Files in RGLab/RNASeqPipelineR
Construct Standardized pipelines for processing RNASeq data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/RNASeqPipelineR.R
R/RNASeq_kallisto.R
R/sysdata.rda
README.md
RNASeqPipelineR.Rproj
inst/extdata/testData.zip
inst/extdata/testPheno.csv
man/AlignmentSTAR.Rd
man/MiTCR.Rd
man/QualityControl.Rd
man/RNASeqPipeline.Rd
man/RSEMAssembleExpressionMatrix.Rd
man/RSEMCalculateExpression.Rd
man/RSEMSummarizeMapping.Rd
man/SRAOverview.Rd
man/annotateSRA.Rd
man/annotateUCSC.Rd
man/annotationsFromSRX.Rd
man/assignConfig.Rd
man/buildGenomeIndexSTAR.Rd
man/buildGenomeIndexSTAR2.Rd
man/buildReference.Rd
man/concatenateFastq.Rd
man/configure_project.Rd
man/convertSRAtoFastQ.Rd
man/createProject.Rd
man/detectAspera.Rd
man/devel_truncateData.Rd
man/downloadSRA.Rd
man/getAndConnectSRAdb.Rd
man/getConfig.Rd
man/getConfigDir.Rd
man/getConfigFile.Rd
man/getDataFromSRX.Rd
man/getDir.Rd
man/getExpressionSet.Rd
man/kallistoAlign.Rd
man/kallistoAssembleOutput.Rd
man/kallistoAssembleQC.Rd
man/kallistoBuildTranscriptIndex.Rd
man/kallistoReadQC.Rd
man/loadImmportTables.Rd
man/loadProject.Rd
man/mergeData.Rd
man/pear.Rd
man/pipelineReport.Rd
man/qualityRNASeQC.Rd
man/readConfig.Rd
man/runFastQC.Rd
man/saveConfig.Rd
man/sequenceAlignmentTopHat.Rd
man/setGenomeReference.Rd
man/sumDuplicates.Rd
man/summarizeDuplication.Rd
man/summarizeFastQC.Rd
tests/test-all.R.bak
tests/testthat/manualTest.R
vignettes/RNASeqPipelineRVignette.Rmd
vignettes/RNASeqPipelineRVignette.html
vignettes/RNASeqPipelineRVignette.pdf
