View source: R/RNASeq_kallisto.R
Assemble kallisto and fastqc QC information and potentially combine with annotation data. Write 'kallisto_Pheno.csv' to OUTPUT directory.
1 2 | kallistoAssembleQC(paired = TRUE, doAnnotation = TRUE,
phenoMatchLabel = "Sample")
|
paired |
if TRUE then paired end data else single read data |
doAnnotation |
if TRUE then add annotation data to qc info. The annotation file must be the sole .csv file in the RAW_ANNOTATIONS directory. |
phenoMatchLabel |
column name that contains the fastq file names without the paired suffix label in the annotation data. Used to match information between the phenotype annotation file, kallisto QC, and FASTQC information. Defaults to 'Sample'. Not used if doAnnotation is FALSE. |
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