Description Usage Arguments Details Examples
View source: R/RNASeqPipelineR.R
Create the skeleton for a new RNASeqPipeline project.
1 2 | createProject(project_name, path = ".", verbose = FALSE,
load_from_immport = FALSE)
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project_name |
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path |
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verbose |
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load_from_immport |
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createProject will create a new RNASeqPipeline project under directory 'project_name' in the path specified by 'path'. The function creates the directory structure libraryd by RNASeqPipeline within the new project directory, including locations for fastQ files, fastQC output, RSEM quantification, and optionally GEO and SRA files if the data must be downloaded or linked to a GEO accession. Standard locations will also be provided to annotate the data utilizing the Immport schema. If the project exists, it will load the configuration if it can find it, otherwise it will proceed to re-configure the project.
1 2 3 4 5 6 7 | # construct a projects skeleton in a new folder titled "myproject".
createProject("myproject",path=".")
createProject("myproject",path=".",verbose=TRUE)
## Not run:
createProject("myproject",path=".",load_from_immport=TRUE) #won't work unless immport is set up
## End(Not run)
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