kallistoAssembleOutput: Assemble kallisto output into a single table.
In RGLab/RNASeqPipelineR: Construct Standardized pipelines for processing RNASeq data
View source: R/RNASeq_kallisto.R
Description
Combine all count and tpm results from kallisto output into a single table. Also
read error files and extract read count, aligned read count, and estimated average
length of reads. Write 'kallisto_counts.csv' and 'kallisto_tpm.csv' to OUTPUT directory.
Usage
1
kallistoAssembleOutput(paired = TRUE)
Arguments
paired
If true then paired data else single read data. Default is
TRUE.
RGLab/RNASeqPipelineR documentation built on Jan. 19, 2020, 12:31 a.m.
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View source: R/RNASeq_kallisto.R
Description
Combine all count and tpm results from kallisto output into a single table. Also read error files and extract read count, aligned read count, and estimated average length of reads. Write 'kallisto_counts.csv' and 'kallisto_tpm.csv' to OUTPUT directory.
Usage
1 | kallistoAssembleOutput(paired = TRUE)
|
Arguments
paired |
If true then paired data else single read data. Default is TRUE. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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