convertSRAtoFastQ: Convert SRA files to FastQ

Description Usage Arguments Details

View source: R/RNASeqPipelineR.R

Description

Uses CLI SRA Toolkit to convert SRA files to FastQ if they don't already exist.

Usage

1
convertSRAtoFastQ(ncores = 8)

Arguments

ncores

integer how many threads to use

Details

Converts SRA files to FastQ using the SRA Toolkit. The function checks whether the FastQ files exist, and if not, performs the conversion.


RGLab/RNASeqPipelineR documentation built on Jan. 19, 2020, 12:31 a.m.