runFastQC: Perform FastQC quality control
In RGLab/RNASeqPipelineR: Construct Standardized pipelines for processing RNASeq data
Description
Usage
Arguments
Details
View source: R/RNASeqPipelineR.R
Description
Runs fastqc quality control on the FASTQ files. Parallel processing is run using fastqc
internal threading (-t option). Each thread requires 250MB of memory.
Usage
1
runFastQC(ncores = 4)
Arguments
ncores
integer how many threads to use. Must be less than or equal to number
of cores on machine.
Details
Produces FASTQC reports for each FASTQ file using fastqc. FASTQ input files must have
extension fastqc or fq (capitalization sensitive). FASTQC output will be
written to FASTQC directory.
RGLab/RNASeqPipelineR documentation built on Jan. 19, 2020, 12:31 a.m.
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Description Usage Arguments Details
View source: R/RNASeqPipelineR.R
Description
Runs fastqc quality control on the FASTQ files. Parallel processing is run using fastqc internal threading (-t option). Each thread requires 250MB of memory.
Usage
1 | runFastQC(ncores = 4)
|
Arguments
ncores |
|
Details
Produces FASTQC reports for each FASTQ file using fastqc. FASTQ input files must have
extension fastqc or fq (capitalization sensitive). FASTQC output will be
written to FASTQC directory.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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