annotateUCSC: Annotate features: map UCSC gene cluster id to gene symbols
In RGLab/RNASeqPipelineR: Construct Standardized pipelines for processing RNASeq data
View source: R/RNASeqPipelineR.R
Description
Annotate features by mapping UCSC gene cluster ids to gene symbols.
Usage
1
annotateUCSC(genome = "hg38", annotateTable = NULL, force = TRUE)
Arguments
genome
specify the genome and version of
annotation
annotateTable
Each row is a transcript and the
columns are: transcript ID, Ensemble gene ID, gene symbol, UCSC
clusterId. The clusterId column must have 'clusterId' in column name and
not be present in any other column.
force
if TRUE force the annoation even if the
feature file already exists
RGLab/RNASeqPipelineR documentation built on Jan. 19, 2020, 12:31 a.m.
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View source: R/RNASeqPipelineR.R
Description
Annotate features by mapping UCSC gene cluster ids to gene symbols.
Usage
1 | annotateUCSC(genome = "hg38", annotateTable = NULL, force = TRUE)
|
Arguments
genome |
specify the genome and version of annotation |
annotateTable |
Each row is a transcript and the columns are: transcript ID, Ensemble gene ID, gene symbol, UCSC clusterId. The clusterId column must have 'clusterId' in column name and not be present in any other column. |
force |
if TRUE force the annoation even if the feature file already exists |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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