kallistoBuildTranscriptIndex: kallisto methods
In RGLab/RNASeqPipelineR: Construct Standardized pipelines for processing RNASeq data

Implement kallisto alignment and quantification

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kallistoBuildTranscriptIndex(path = NULL,
  fasta_file = "Homo_sapiens.GRCh38.cdna.all.fa",
  name = "GRCH38_R91.idx", force = FALSE)

`path`	path to directory containing transcript fasta file
`fasta_file`	name of fasta file to be used
`name`	name of index to be built
`force`	if TRUE build index if it already exists else don't.

Methods to apply kallisto alignment and quantification to RNASeq data.

Build transcript reference index for kallisto

Build kallisto transcript reference if it is not already built. To force the build then set force to TRUE.

RGLab/RNASeqPipelineR documentation built on Jan. 19, 2020, 12:31 a.m.

RGLab/RNASeqPipelineR index

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