API for RajLabMSSM/echotabix
echoverse module: automated creation and querying of tabix files
| Global functions | |
|---|---|
| .onLoad | Source code |
| DF_to_dt | Man page Source code |
| check_convert_methods | Source code |
| check_delimiter | Man page Source code |
| check_outputs | Source code |
| construct_outputs | Man page Source code |
| construct_query | Man page Source code |
| construct_subset_vcf_name | Man page Source code |
| construct_tabix_path | Man page Source code |
| construct_vcf_path | Man page Source code |
| convert | Man page Source code |
| convert_and_query | Man page Source code |
| dt_to_vcf | Man page Source code |
| fill_na | Man page Source code |
| filter_table_snps | Source code |
| filter_vcf_query_samples | Man page Source code |
| filter_vcf_snps | Source code |
| fix_query_style | Source code |
| get_bgzip | Source code |
| get_chain_file | Man page Source code |
| get_column_indices | Source code |
| get_gunzip | Source code |
| get_locus_vcf_folder | Man page Source code |
| get_os | Source code |
| get_vcf_suffixes | Source code |
| granges_style | Source code |
| granges_to_dt | Man page Source code |
| granges_to_string | Man page Source code |
| index | Man page Source code |
| index_conda | Man page Source code |
| index_rsamtools | Man page Source code |
| index_seqminer | Man page Source code |
| index_variantannotation | Man page Source code |
| infer_chrom_column | Source code |
| infer_chrom_type | Man page Source code |
| infer_comment_char | Source code |
| infer_tabix_format | Source code |
| is_tab_delimited | Source code |
| is_tabix | Man page Source code |
| is_vcf | Man page Source code |
| liftover | Man page Source code |
| messager | Source code |
| query | Man page Source code |
| query_table | Man page Source code |
| query_table_conda | Man page Source code |
| query_table_genomicfiles | Man page Source code |
| query_table_rsamtools | Man page Source code |
| query_table_seqminer | Man page Source code |
| query_vcf | Man page Source code |
| query_vcf_conda | Man page Source code |
| query_vcf_rtracklayer | Man page Source code |
| query_vcf_seqminer | Man page Source code |
| query_vcf_variantannotation | Man page Source code |
| read_bgz | Man page Source code |
| read_bgz_datatable | Source code |
| read_bgz_utils | Source code |
| remove_empty_tabix | Source code |
| report_tabular | Source code |
| report_time | Man page Source code |
| report_vcf | Source code |
| rhtslib_warning | Man page Source code |
| rm_tbi | Man page Source code |
| run_bgzip | Man page Source code |
| run_bgzip_conda | Man page Source code |
| run_bgzip_rsamtools | Man page Source code |
| run_gunzip | Man page Source code |
| run_gunzip_conda | Man page Source code |
| run_gunzip_rutils | Man page Source code |
| save_tabular | Source code |
| save_vcf | Man page Source code |
| scanTabix_to_dt | Man page Source code |
| select_method | Man page Source code |
| select_zgrep | Source code |
| sort_coordinates | Man page Source code |
| sort_coordinates_bash | Man page Source code |
| sort_coordinates_check_method | Source code |
| sort_coordinates_datatable | Man page Source code |
| suffixes | Man page Source code |
| vcf_to_dt | Man page Source code |
