find_switch_logistic_fastglm: Fit fast logistic regression and find switching timepoint
In SGDDNB/GeneSwitches: Discover the order of gene regulatory events during cell state transitions
View source: R/fit_logistic_regression.R
Description
This function fits fast logistic regression and find switching timepoint for each gene
Usage
1
2
find_switch_logistic_fastglm(sce, downsample = FALSE, ds_cutoff = 0.7,
zero_ratio = 0.7, sig_FDR = 0.05, show_warnings = TRUE)
Arguments
sce
SingleCellExperiment
downsample
Logical. if do random downsampling of zeros
ds_cutoff
only do downsampling if zero percentage is over this cutoff
zero_ratio
downsampling zeros to this proportion
sig_FDR
FDR cut off for significant genes
SGDDNB/GeneSwitches documentation built on Dec. 16, 2020, 9:32 a.m.
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View source: R/fit_logistic_regression.R
Description
This function fits fast logistic regression and find switching timepoint for each gene
Usage
1 2 | find_switch_logistic_fastglm(sce, downsample = FALSE, ds_cutoff = 0.7,
zero_ratio = 0.7, sig_FDR = 0.05, show_warnings = TRUE)
|
Arguments
sce |
SingleCellExperiment |
downsample |
Logical. if do random downsampling of zeros |
ds_cutoff |
only do downsampling if zero percentage is over this cutoff |
zero_ratio |
downsampling zeros to this proportion |
sig_FDR |
FDR cut off for significant genes |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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