reduce_pathways: Reduce redundant pathways
In SGDDNB/GeneSwitches: Discover the order of gene regulatory events during cell state transitions
View source: R/find_switch_pathway.R
Description
Reduce significant pathways that are with same genes over certain ratio,
do up- and down- regulated pathways separately
Usage
1
reduce_pathways(switch_pw, pathways, redundant_pw_rate = 0.8)
Arguments
switch_pw
a data frame with significantly changed pathways
pathways
a list of pathways with genes
redundant_pw_rate
cutoff ratio for merging redundant pathways
SGDDNB/GeneSwitches documentation built on Dec. 16, 2020, 9:32 a.m.
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View source: R/find_switch_pathway.R
Description
Reduce significant pathways that are with same genes over certain ratio, do up- and down- regulated pathways separately
Usage
1 | reduce_pathways(switch_pw, pathways, redundant_pw_rate = 0.8)
|
Arguments
switch_pw |
a data frame with significantly changed pathways |
pathways |
a list of pathways with genes |
redundant_pw_rate |
cutoff ratio for merging redundant pathways |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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