phyper_pathway: Find significantly changed pathways and switching timepoint
In SGDDNB/GeneSwitches: Discover the order of gene regulatory events during cell state transitions

Apply hypergeometric test to determine significantly changed pathways and determine the switching timepoint for each pathway

1 2	phyper_pathway(N, pathways, toplotgl_ptw, sig_FDR = 0.05, direction = c("up", "down"))

`N`	expressed genes in pathways
`pathways`	a list of pathways with genes
`toplotgl_ptw`	swiching genes to plot
`sig_FDR`	FDR cut off for significant pathways
`direction`	switching direction, up or down

SGDDNB/GeneSwitches documentation built on Dec. 16, 2020, 9:32 a.m.

SGDDNB/GeneSwitches index

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