plot_pathway_density: Pathways ridge plot
In SGDDNB/GeneSwitches: Discover the order of gene regulatory events during cell state transitions
View source: R/find_switch_pathway.R
Description
This function generates pathways ridge plots
Usage
1
2
plot_pathway_density(switch_pw_re, toplotgl_sig, pw_direction = c("up",
"down"), orderbytime = TRUE)
Arguments
switch_pw_re
significant pathways to plot
toplotgl_sig
switching genes
orderbytime
order the pathways by switching time (mean time of switching genes) if TRUE,
order the pathways by FDR if FALSE
direction
switching direction of the pathway, up or down
SGDDNB/GeneSwitches documentation built on Dec. 16, 2020, 9:32 a.m.
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View source: R/find_switch_pathway.R
Description
This function generates pathways ridge plots
Usage
1 2 | plot_pathway_density(switch_pw_re, toplotgl_sig, pw_direction = c("up",
"down"), orderbytime = TRUE)
|
Arguments
switch_pw_re |
significant pathways to plot |
toplotgl_sig |
switching genes |
orderbytime |
order the pathways by switching time (mean time of switching genes) if TRUE, order the pathways by FDR if FALSE |
direction |
switching direction of the pathway, up or down |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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