subset_pseudotime: Subset GeneSwitches object based on the range of pseudotime
In SGDDNB/GeneSwitches: Discover the order of gene regulatory events during cell state transitions
Description
This function subsets GeneSwitches object based on the range of pseudotime
Usage
1
2
subset_pseudotime(sce, min_time, max_time, assayname = "expdata",
minexp = 0, mincells = 10)
Arguments
sce
GeneSwitches object which is a SingleCellExperiment object
min_time
lower bound of pseudotime
max_time
upper bound of pseudotime
assayname
expression assay to use
minexp
minimun expression to filer genes
mincells
minimun cells with expression
SGDDNB/GeneSwitches documentation built on Dec. 16, 2020, 9:32 a.m.
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Description
This function subsets GeneSwitches object based on the range of pseudotime
Usage
1 2 | subset_pseudotime(sce, min_time, max_time, assayname = "expdata",
minexp = 0, mincells = 10)
|
Arguments
sce |
GeneSwitches object which is a SingleCellExperiment object |
min_time |
lower bound of pseudotime |
max_time |
upper bound of pseudotime |
assayname |
expression assay to use |
minexp |
minimun expression to filer genes |
mincells |
minimun cells with expression |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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