plot_gene_exp: Plot gene expression

In SGDDNB/GeneSwitches: Discover the order of gene regulatory events during cell state transitions

Description

This function plot gene expression on two-dimensional space

Usage

plot_gene_exp(sce, geneofi, reduction, downsample = FALSE,
  ds_cutoff = 0.7, zero_ratio = 0.7, ptsize = 0.7, fitting = FALSE)

Arguments

sce	SingleCellExperiment
geneofi	one gene of interest
reduction	dimensional reduction method
downsample	if do random downsampling of zeros
ds_cutoff	only do downsampling if zero percentage is over this cutoff
zero_ratio	downsampling zeros to this proportion
ptsize	point size
fitting	if plot logistic regression fitting

SGDDNB/GeneSwitches documentation built on Dec. 16, 2020, 9:32 a.m.