find_switch_pathway: Find significantly changed pathways and switching timepoint
In SGDDNB/GeneSwitches: Discover the order of gene regulatory events during cell state transitions
View source: R/find_switch_pathway.R
Description
This function finds significantly changed pathways and determine
the switching timepoint for each pathway
Usage
1
2
find_switch_pathway(scerowdata, pathways = msigdb_h_c2_c5, toplotgl_sig,
sig_FDR = 0.05)
Arguments
pathways
a list of pathways with genes
sig_FDR
FDR cut off for significant pathways
sce
SingleCellExperiment
toplotgl_ptw
swiching genes to plot
SGDDNB/GeneSwitches documentation built on Dec. 16, 2020, 9:32 a.m.
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View source: R/find_switch_pathway.R
Description
This function finds significantly changed pathways and determine the switching timepoint for each pathway
Usage
1 2 | find_switch_pathway(scerowdata, pathways = msigdb_h_c2_c5, toplotgl_sig,
sig_FDR = 0.05)
|
Arguments
pathways |
a list of pathways with genes |
sig_FDR |
FDR cut off for significant pathways |
sce |
SingleCellExperiment |
toplotgl_ptw |
swiching genes to plot |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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