correlation: Compute a Correlation Matrix

In Sage-Bionetworks/metanetwork: Network meta analysis

Compute a Correlation Matrix

Description

Compute a Correlation matrix from a an expression matrix and writes to a user specified path. Correlation network is saved as correlationNetwork.csv on the path specified by 'outputpath'.

Usage

correlation(data, path = NULL, method = "pearson", outputpath)

Arguments

data	The input expression/numerical data matrix
path	Optional. Currently not implemented in the function
method	Optional. The type of correlation to be implemented. Options are one of; c('pearson','spearman','kendall'). (Default = pearson)
outputpath	The file path to save the correlation network to.

Value

Returns no value direct to R. This function saves the correlation network as correlationNetwork.csv on the path specified by 'outputpath'.

Sage-Bionetworks/metanetwork documentation built on April 27, 2022, 7:42 a.m.