findModules.leading_eigen: Find Modules with Leading Eigen Edges

In Sage-Bionetworks/metanetwork: Network meta analysis

Find Modules with Leading Eigen Edges

Description

This function iteratively wraps a function that a tries to find densely connected subgraphs in a graph by calculating the leading non-negative eigenvector of the modularity matrix of the graph.

Usage

findModules.leading_eigen(adj, nperm = 10, min.module.size = 30)

Arguments

adj	A n x n upper triangular adjacency in the matrix class format.
nperm	Optional. Number of permutation on the gene ordering. (Default = 10)
min.module.size	Optional. Integer between 1 and n genes. (Default = 30)

Value

GeneModules = n x 3 dimensional data frame with column names as Gene.ID, moduleNumber, and moduleLabel.

Sage-Bionetworks/metanetwork documentation built on April 27, 2022, 7:42 a.m.