API for Sage-Bionetworks/metanetwork
Network meta analysis

Global functions
applySparrowBonferroni Source code
applySparrowFDR Source code
aracne Source code
arbitrarySparsity Source code
c3netWrapper Source code
calcHyperPval Source code
compute.LocalModularity Source code
compute.Modularity Source code
compute.ModularityDensity Source code
compute.ModuleQualityMetric Source code
computeBICcurve Source code
computeDriverDistance Source code
computeDriverDistancePvalue Source code
correlation Source code
covarianceSelection Source code
covarianceSelectionBisection Source code
covarianceSelectionMBPath Source code
covarianceSelectionPath Source code
deployNetworkSparsity Source code
fastlmbic Source code
findModules.CFinder Source code
findModules.CFinder.once Source code
findModules.GANXiS Source code
findModules.GANXiS.once Source code
findModules.consensusCluster Source code
findModules.consensusKmeans Source code
findModules.edge_betweenness Source code
findModules.edge_betweenness.once Source code
findModules.fast_greedy Source code
findModules.fast_greedy.once Source code
findModules.hclust Source code
findModules.infomap Source code
findModules.infomap.once Source code
findModules.label_prop Source code
findModules.label_prop.once Source code
findModules.leading_eigen Source code
findModules.leading_eigen.once Source code
findModules.linkcommunities Source code
findModules.linkcommunities.once Source code
findModules.louvain Source code
findModules.louvain.once Source code
findModules.spinglass Source code
findModules.spinglass.once Source code
findModules.walktrap Source code
findModules.walktrap.once Source code
fisherEnrichment Source code
genie3 Source code
installAracne Source code
lassoAIC Source code
lassoBIC Source code
lassoCV1se Source code
lassoCVmin Source code
metaNet Man page
metaNet-package Man page
mpiWrapper Source code
mrnetWrapper Source code
multiplot Source code
rankConsensus Source code
rankConsensus2 Source code
rankedEdgeList Source code
regulatorAnalysis.directed Source code
regulatorAnalysis.directed_weighted Source code
regulatorAnalysis.undirected Source code
regulatorAnalysis.undirected_weighted Source code
ridgeAIC Source code
ridgeBIC Source code
ridgeCV1se Source code
ridgeCVmin Source code
run.consensus.cluster Source code
score.nodes Source code
simulateNetworkData Source code
sparrow2Z Source code
sparrowNetwork Source code
sparrowZ Source code
tigress Source code
wgcnaSoftThreshold Source code
wgcnaTOM Source code
Sage-Bionetworks/metanetwork documentation built on June 8, 2017, 1:15 a.m.