View source: R/regulatorAnalysis.directed.R
regulatorAnalysis.directed | R Documentation |
Identifies network un-weighted regulators from directed networks
regulatorAnalysis.directed(adj, G, h = 3, FDR = 0.05)
adj |
Required. An n x n weighted upper triangular adjacency in the matrix class format. |
G |
Required. A named vector of node scores. |
h |
Optional. Neighborhood search distance (h nodes away from current node) (Default = 3) |
FDR |
Optional. Adjusted pvalue cutoff for regulator selection. (Default = 0.05) |
scores = n x 5 dimensional data frame with columns giving neighborhood based score, adjusted pvalue, whether a gene is regulator/global regulator.
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