findModules.CFinder.once: This function tries to get modules from network adjacency...

In Sage-Bionetworks/metanetwork: Network meta analysis

This function tries to get modules from network adjacency matrix using Link communities algorithm.

Description

This function tries to get modules from network adjacency matrix using Link communities algorithm.

Usage

findModules.CFinder.once(adj, path, min.module.size, i)

Arguments

adj	A n x n upper triangular adjacency in the matrix class format.
path	File path location of CFinder.
min.module.size	Optional. Integer between 1 and n genes. (Default = 30)
i	Required. Character name of temp file name to generate.

Value

GeneModules = n x 3 dimensional data frame with column names as Gene.ID, moduleNumber, and moduleLabel.

Sage-Bionetworks/metanetwork documentation built on April 27, 2022, 7:42 a.m.