findModules.label_prop: Wraps Finding Modules with Graph Adjacency
In Sage-Bionetworks/metanetwork: Network meta analysis
View source: R/findModules.label_prop.R
findModules.label_prop R Documentation
Wraps Finding Modules with Graph Adjacency
Description
Deploys 'igraph::graph.adjacency' iterativly to find module structure.
Usage
findModules.label_prop(adj, nperm = 10, min.module.size = 30)
Arguments
adj
A n x n upper triangular adjacency in the matrix class format.
nperm
Optional. Number of permutation on the gene ordering. (Default = 10)
min.module.size
Optional. Integer between 1 and n genes. (Default = 30)
Value
GeneModules = n x 3 dimensional data frame with column names as Gene.ID,
moduleNumber, and moduleLabel.
Sage-Bionetworks/metanetwork documentation built on April 27, 2022, 7:42 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/findModules.label_prop.R
| findModules.label_prop | R Documentation |
Wraps Finding Modules with Graph Adjacency
Description
Deploys 'igraph::graph.adjacency' iterativly to find module structure.
Usage
findModules.label_prop(adj, nperm = 10, min.module.size = 30)
Arguments
adj |
A n x n upper triangular adjacency in the matrix class format. |
nperm |
Optional. Number of permutation on the gene ordering. (Default = 10) |
min.module.size |
Optional. Integer between 1 and n genes. (Default = 30) |
Value
GeneModules = n x 3 dimensional data frame with column names as Gene.ID, moduleNumber, and moduleLabel.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.