fisherEnrichment: Fishers Enrichment Analysis
In Sage-Bionetworks/metanetwork: Network meta analysis
View source: R/fisherEnrichment.R
fisherEnrichment R Documentation
Fishers Enrichment Analysis
Description
This function to perform Fishers enrichment analysis. Tests the enrichment of
'genesInGeneSet' in 'genesInModule' considering a bacckground gene set of
'genesInBackground'.
Usage
fisherEnrichment(genesInModule, genesInGeneSet, genesInBackground)
Arguments
genesInModule
Required. A character vector of differentially expressed genes or genes in a given module to test
genesInGeneSet
Required. A character vector of genes in a gene set like GO annotations, pathways etc.
genesInBackground
Required. A character vector of background genes
Value
A dataframe consisting of column value of fisher test P-Value. number
of genes in the test set, enrichment set, the overlap, odds ratio and the genes
from the test set which are present in the enrichment set.
Sage-Bionetworks/metanetwork documentation built on April 27, 2022, 7:42 a.m.
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View source: R/fisherEnrichment.R
| fisherEnrichment | R Documentation |
Fishers Enrichment Analysis
Description
This function to perform Fishers enrichment analysis. Tests the enrichment of 'genesInGeneSet' in 'genesInModule' considering a bacckground gene set of 'genesInBackground'.
Usage
fisherEnrichment(genesInModule, genesInGeneSet, genesInBackground)
Arguments
genesInModule |
Required. A character vector of differentially expressed genes or genes in a given module to test |
genesInGeneSet |
Required. A character vector of genes in a gene set like GO annotations, pathways etc. |
genesInBackground |
Required. A character vector of background genes |
Value
A dataframe consisting of column value of fisher test P-Value. number of genes in the test set, enrichment set, the overlap, odds ratio and the genes from the test set which are present in the enrichment set.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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