covarianceSelectionMBPath: Covariance based on Neighborhood Selection

In Sage-Bionetworks/metanetwork: Network meta analysis

Covariance based on Neighborhood Selection

Description

This function defines the covariance neighborhood between gene-gene edges in an expression matrix.

Usage

covarianceSelectionMBPath(X, rankedEdges, numberObservations, startI = 1)

Arguments

X	Required. An expression matrix
rankedEdges	Required. An edge list in the form of a matrix where column one is gene one and column 2 is gene two
numberObservations	Required. The number of samples comprising the network (?)
startI	Optional. Start at the first edge in 'rankedEdges' (Default = 1)

Value

A list object of containing the BIC estimate, bicNeighborhood (?) , neighborhoods (?), flag (?)

Sage-Bionetworks/metanetwork documentation built on April 27, 2022, 7:42 a.m.