A data.frame containing the chromsome and end coordiantes for all the bins of the single-cell copy number matrix 'copynumbers'. This table is used for SCclust, some data may be recurrent now to preserve compatibility with that package and the functions here. This table is cross referenced to create the 'genes' table, an interpolated table to link the bins to genes
A data frame with chromosome and position information
bin.chrom, object class 'factor' corresponding to the chromosome of the bin.
bin.start, starting coordinate of the bin
bin.start.abspos, cumulative start positions of the bins
bin.end, end coordinate of the bin
bin.length, size of the bin
mappable.positions, number of mappable positions
gc.content, percent gc content
chrom.numeric, a numeric representation of the autosomes (e.g. 1..24 for hg19, 1..23 for mm10, 1..30 for bta9
chrom, alternate representation of the chromosome to bind to X for SCclust
chrompos, alternate representation of the bin.start to bind to X for SCclust
abspos, alternate representation of the chromosome to bind to X for SCclust
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.