list_genes_in_region: finds genes within one chromosome interval

In SingerLab/gac: Genetic Analysis of Cells

finds genes within one chromosome interval

Description

finds genes within one chromosome interval

Usage

list_genes_in_region(cnr, at, show.columns = NULL, identifier = "hgnc.symbol")

Arguments

cnr	a cnr bundle
at	character, coordinate string
show.columns	subset of columns from gene.index to output. default is NULL, which shows all columns
identifier	name of column with gene identifiers

Value

Returns the subset of the gene.index within the coordinates specified. By default all columns are returned, with the option to select a subset using show.columns.

Examples

data(cnr)

list_genes_in_region(cnr, at = "12:58,000,000-59,000,000")

list_genes_in_region(cnr, at = "12:58,000,000-59,000,000",
           show.columns = c("hgnc.symbol", "gene_biotype"))

SingerLab/gac documentation built on March 23, 2024, 5:15 a.m.