keepCells: keep cells from CNR bundle
In SingerLab/gac: Genetic Analysis of Cells
keepCells R Documentation
keep cells from CNR bundle
Description
Both keepCells and excludeCells perform similar functions; keep cells with positive selection, and excludeCells with negative selection
Usage
keepCells(cnr, keep)
Arguments
cnr
the cnr bundle
keep
a string vector of cellID to keep
Value
Returns a CNR bundle with only the cells we want to keep
Examples
data(cnr)
cnr2 <- excludeCells(cnr, excl = cnr$Y$cellID[cnr$qc$ReadsKept < 800000])
cnr3 <- keepCells(cnr, keep = cnr$Y$cellID[cnr$qc$ReadsKept >= 800000])
all.equal(cnr2, cnr3)
SingerLab/gac documentation built on March 29, 2025, 4:38 p.m.
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| keepCells | R Documentation |
keep cells from CNR bundle
Description
Both keepCells and excludeCells perform similar functions; keep cells with positive selection, and excludeCells with negative selection
Usage
keepCells(cnr, keep)
Arguments
cnr |
the cnr bundle |
keep |
a string vector of cellID to keep |
Value
Returns a CNR bundle with only the cells we want to keep
Examples
data(cnr)
cnr2 <- excludeCells(cnr, excl = cnr$Y$cellID[cnr$qc$ReadsKept < 800000])
cnr3 <- keepCells(cnr, keep = cnr$Y$cellID[cnr$qc$ReadsKept >= 800000])
all.equal(cnr2, cnr3)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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