API for SingerLab/gac
Genetic Analysis of Cells

Global functions
DepScores Man page Source code
HeatmapCNR Man page Source code
addCells Man page Source code
addInfo Man page Source code
addPheno Man page Source code
addQC Man page Source code
ampCol Man page
binary.X Man page Source code
binary.cnr Man page Source code
binary.mat Man page Source code
buildCNR Man page Source code
ccClustCol Man page
chromInfo Man page
cluster_heterogeneity Man page Source code
cluster_representation Man page Source code
cnr Man page
consensusClusterCNR Man page Source code
copynumbers Man page
depmap_annotate Man page Source code
distCNR Man page Source code
dna Man page
doKSpectral Man page Source code
eps Man page Source code
excludeCells Man page Source code
expand2genes Man page Source code
exportCNR Man page Source code
fgaCol Man page
fisher_tree Man page Source code
gac Man page
gene.aggregate Man page Source code
gene.index Man page
genotype_vdj Man page Source code
getSubclonesCNR Man page Source code
get_alt_frequencies Man page Source code
get_alt_frequenciesCNR Man page Source code
get_amp_frequencies Man page Source code
get_bin_frequencies Man page Source code
get_cluster_profiles Man page Source code
get_del_frequencies Man page Source code
get_gene_details Man page Source code
get_gene_frequencies Man page Source code
gisticGR Man page Source code
gisticRegions Man page Source code
hclustCNR Man page Source code
hg19_cytoBand Man page
kSpectral Man page Source code
keepCells Man page Source code
legAmp Man page
legFGA Man page
legLog2R Man page
legPloidy Man page
legSeg Man page
lookupCN Man page Source code
lowCol Man page
mapd Man page Source code
mark.genes Man page Source code
merge_lineage_tables Source code
minimum.intersect Man page Source code
nbins Man page Source code
ncells Man page Source code
ngenes Man page Source code
npheno Man page Source code
oncoKB_annotate Man page Source code
optClust Man page Source code
parctan Man page Source code
pheno Man page
phyloCNR Man page Source code
phyloDDRC Man page Source code
plog Man page Source code
ploidyCol Man page
plotCL Man page Source code
plot_ccp Man page Source code
plot_frequencies Man page Source code
pull_gene_details Man page Source code
qc Man page
rank_clones Man page Source code
roundCNR Man page Source code
scClustCNR Man page Source code
segCol Man page
setBrayClusters Man page Source code
setKcc Man page Source code
sim_fisherCNR Man page Source code
sinkhornKnopp Man page Source code
subsetCNR Man page Source code
subset_on_bins Man page Source code
subset_on_chrom Man page Source code
subset_on_coordinates Man page Source code
subset_on_genes Man page Source code
summaryCNR Man page Source code
symmetricSinkhornKnopp Man page Source code
ternary.cnr Man page Source code
use_clusters Man page Source code
vdjBrayClust Man page Source code
vdjHeatmap Man page Source code
vdjPlotClust Man page Source code
SingerLab/gac documentation built on July 22, 2021, 3:27 a.m.